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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the shrub willows through the  Community Science Program , using long-read sequencing to assemble the repetitive areas …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab Automation, and Administration departments. He previously … Deputy of Operations provides oversight and leadership of JGI operations infrastructure, including space and …
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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SIPs with Standards
… show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … goal is to generate SIP data that can be useful to multiple teams and analyses. This episode, Rex Malmstrom (JGI), and …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … We did so by analyzing this huge sample set specifically using results from tissue and condition-specific expression …
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Annotation of metagenome short reads using proxygenes
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Transcriptional control of Clostridium autoethanogenum using CRISPRi
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the … With a full genome sequence, researchers have been able to look into soybean’s strengths – along with a fungus that …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold genetic blueprints for … tracking gene activity and chemical output over time, the team mapped how the bacterium redirects its energy, building … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of …
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