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The Soil Blooms Green
… Every fall, a mysterious green growth appears on top of farmers’ fields: a microbial community that might be quietly improving the soil. Penn State researchers Mary Ann Bruns …
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A Natural Mechanism Can Turbocharge Viral Evolution
… allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus … a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … Office of the President. This work was part of the DOE Joint BioEnergy Institute ( http://www.jbei.org ) …
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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Population Level Analysis of Evolved Mutations Underlying Improvements in Plant Hemicellulose and Cellulose Fermentation by Clostridium phytofermentans
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Improved Gene Annotation of the Fungal Wheat Pathogen Zymoseptoria tritici Based on Combined Iso-Seq and RNA-Seq Evidence.
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations … go unrecognized. Researchers at the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Streamlining Regulon Identification in Bacteria
… transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … is part of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was supported by the U.S. Department of Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome Trust … Trust Sanger Institute, UK and Lawrence Berkeley National Lab …
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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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