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Gotta Catch 'Em Gall
… galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find …
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Uncovering Novel Genomes from Earth’s Microbiomes
… that time. “Looking across the tree of life, it’s striking how many uncultivated lineages are only represented by … field [metabolic modeling], but they might be interested in how biochemistry impacts what they work on. The genomics … finding ways to utilize the catalog in his own research on how microbes respond to climate change. “With this dataset I …
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JGI Workshops at PAG
… to BER funded activities of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you can use the KBase system to accelerate your plant …
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Igor Grigoriev
Nature Ecol Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal genomics resource.  … Nucleic Acids Res. 49(D1):D1004-D1011 Swift et al (2021) Anaerobic gut fungi are an untapped reservoir of …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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JGI-USCCN Strain Sequencing Opportunity
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SIPs with Standards
… for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a catch: SIP labwork and analysis …
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An Automated Tool for Assessing Virus Data Quality
… and identified from environmental samples (metagenomes). However, the quality and completeness of … microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by … viruses and associate them with their microbial hosts. However, assembling viral genomes from metagenomes is …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
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JGIota: Sequencing Shiitakes with David Hibbett
… week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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A Plant Root Atlas for Tracking Developmental Trajectories
… that could help researchers track cell development and how they determine identity, as well as the roles played by …
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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