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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model … she was Director of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The … (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy Joint …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen BP, … T, et al. MAGI: A Method for Metabolite Annotation and Gene Integration. ACS Chem Biol. 2019;14: 704–714. 6. …
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Identifying candidate structured RNAs in CRISPR operons.
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Computationally Classifying Fungal Lifestyles
… were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play … Intent are due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … than 5,000 data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the … a senior investigator at the NCBI and one of the senior authors on the paper, of the uncovered viral diversity. …
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … of Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 McGivern BB et al. Decrypting bacterial … Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. doi: …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and …
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Nigel Mouncey
… the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the … Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and carried forward … focused on the discovery, development and commercialization of novel production organisms and fermentation processes for …
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