Results

Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their growth program, and on how plants coordinate their gene expression with light and …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering and characterizing the mechanisms … that makes up an individual’s genome. The genes of sorghum plants are likely responsible for the crop’s ability to … rhizosphere (soil surrounding the root) samples from the plants at the same time each week over the full life cycle …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas Tyml and Frederik … study of root colonization by resident phages of a plant growth promoting bacterium. And my mentor is Dr. …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Integrating Experimentation with Data
Seattle, Washington.   Topics will include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled …
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Katherine Louie
Transitions in the Green Alga Chromochloris zofingiensis. Plant Cell. 2019;31: 579–601. 5. Erbilgin O, Rübel O, Louie …
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Emiley Eloe-Fadrosh
Nayfach A, et al. 2021. A genomic catalogue of Earth’s microbiomes. Biotechnol . doi: 10.1038/s41587-020-0718-6. …
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