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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer … to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. These evolutionary … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
Learn more
JGIota: Sequencing Shiitakes with David Hibbett
… David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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Honey Bee Gut Microbiota Divvy Up Dinner
… of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the bee’s ileum, a structure analogous to the human small intestine; and  Bifidobacterium,  …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which … and more. And eventually, their findings could help us grow better crops, with less impact on our planet. …
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Team Science Reveals Important Protein in Poplar
… With increased lignin and iron, engineered poplar can be used to develop bioproducts for industrial applications. For example, lignin could be used for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Evolution of a Fungal Gene Expression Regulator
… but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC distribution across … the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like …
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The fungus that made itself at home
… the dry rot ( Serpula lacrymans ) is so destructive in houses. A study involving six brown rot fungi reveals the … borders, adapting to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by … from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans …
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“A STEM career is in reach and accessible”
… higher education and access to fulfilling science careers, JGI hosted five students from Antioch High School this …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than humans, like …
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Supercharging SIP in the Fungal Hyphosphere
… have successfully automated aspects of a commonly-used process for studying microbial communities, with … The Impact Stable isotope probing is a long and laborious process — as well as a key way scientists study … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … is available — enabling metadata-driven scientific discoveries. GOLD’s  public Application Programming Interface …
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