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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … led by Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI … would work well in further experiments, so she could glean information about their specific function, filling in our …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this gap in a … genome assemblies in the National Center for Biotechnology Information's GenBank. This led to identifying 6,467 of … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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A Complex Confection Decoded: Sugarcane Reference Genome
… sugarcane  genome , the JGI provides foundational genetic information that crop breeders can use to improve sugarcane … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The work was partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of …
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JGI at the AGU Fall Meeting
… December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … Integrating Collaborations for User Science (FICUS) program allows scientists access to multiple user facilities … and volatile organic compound cycling in the tropical rainforest at Biosphere 2” 2pm Convention Center, Poster Hall …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … genes were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because … Energy Research Scientific Computing Center , another user facility at Berkeley Lab.  “It’s also a credit to Aydin …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… completing the human genome, the JGI became a national user facility. The staff and resources shifted to offering … J., Gordon, L., Olsen, A. et al. The DNA sequence and biology of human chromosome 19 . Nature. 428, 529–535 …
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The Expanding Universe of Methane Metabolisms in Archaea
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … related to known methanogens. With the help of this information, the researchers found evolutionary … found on early Earth.”  Through the JGI Community Science Program, Inskeep and McKay recovered metagenome-assembled …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Identifying the Microbial Cleanup Crew at a Superfund Site
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze the resulting … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Computationally Classifying Fungal Lifestyles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have … 25  Dothideomycetes species, and also provides more information about speciation events. …
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Tracing the Evolution of Shiitake Mushrooms
… sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … JGI (https://ror.org/04xm1d337), a DOE Office of Science User Facility, was supported by the Office of Science of the …
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Mining Metagenomes for Cas Proteins
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … the event of a new infection, the microbes use the genetic information encoded in CRISPR sequences to target the virus … Scientific Computing Center , a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory. …
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