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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … Data Science Group Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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Uri Neri
… he develops tools for viral discovery and analysis, with a particular fondness for RNA viruses – though he'll take a … anything related to microbial parasites. When not debugging pipelines, he can be found trying to convince others that … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … of eight institutions led by UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … properties,” said study coauthor Igor Grigoriev , JGI Fungal & Algal Program Head. “But still, there are no …
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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” …
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … of  Citrus sinensis , the sweet orange.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … active under different conditions. This was facilitated in part by RNA library preparation and sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… 2021, the JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) … for the summer term (May through August) and selected projects will receive stipend and travel expenses, both for …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … as the data are not proprietary. In addition, the JGI has a Partnerships Development Team which helps catalyze … Feel free to  reach out to any of them with questions. Q:  Apart from instrumental support, how much help can users …
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Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “Thermoanaerobacter cellulolyticus”
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The JGI Data Portal: Improving User Experience
… from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … said Linda Setchell, a Truss product manager who is part of the joint JGI/Truss team. Based on Google Analytics … one (or more) of the JGI Portals.” Consider volunteering to participate in a user research session by contacting the JGI …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … high-quality genomic information using minute quantities of DNA derived from individual environmental cells. The …
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