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… an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … and interactions. Supported by JGI’s ETOP, this new tool will now be available for JGI users interested in …

… If it looks like a duck and quacks like a duck, so the adage goes, it must be a duck. But if the duck gets infected … from The Ohio State University and the University of Michigan studying how virus infections cause significant … Matt Sullivan used an experimental approach with a marine phage-host model to study virus-host-nutrient interactions. …

… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing … are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes …

… Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … an alternative format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed … than were noted inside the cell. “One of the huge advantages of the cell-free system is that the cells are no longer …

… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …

… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it to access nutrients easily from a variety of soils and has a high tolerance of extreme water …

… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … production. Building on the framework provided by our new switchgrass manuscript , we plan to use existing data as …

… A new view into a symbiosis could offer benefits to address … nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two species at once: … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole …

… Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire … that will enable scientists to explore and collect data in new ways,” she said. “We’re excited to be able to offer this … for the first time with  MetaHipMer , taking advantage of scalable parallel algorithms and GPU acceleration, …

… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored …

… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … the JGI here . Bennett is applying the same experiment to a new environment. She is currently working on her thesis to …