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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … roles in regulating global nutrient cycles. The information gained from understanding the interactions between microbes, … could help researchers improve their chances of recovering specific isolate species for culture. “We’ve drawn out the …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … each of these lures are the bait designed to attract specific catches. A similar technique has been developed by … screen, they can now identify microbes with specific functional characteristics. When they tested the screen …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … award allows me to work directly with Dr Susannah Tringe, gain first hand experience working in a national lab, and, …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … these compounds via clear, straight pathways, entailing the function of more than a dozen enzymes. But researchers have … sesquiterpenoids, National Science Foundation Plant-Biotic Interactions Program (grant no. 1758976 to E.S. and P.Z.) …
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Heterologous Expression and CRISPR/Cas9-Assisted Manipulation of the Hybrid Gene Cluster Specifying the Biosynthesis of Meroterpenoids and Phenazines
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The … The planet’s resources are being stretched by a growing human population and increasing demand for agricultural … to provide plants with nutrients and pathogen protection. Specifically, gene expression in that set, implicated in AMF …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … to pursue a STEM career? Working at JGI was a great way to gain experience in a non-academic research environment that …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … history, from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. …
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Soil virus offers insight into maintaining microorganisms
… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … the hidden secrets of soil viruses. The Impact The specific protein described in  a recent study in  Nature … why these AMGs exist in the first place, and what function other AMGs may serve.  The work was enabled in part …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI … novel flow cytometry protocols for targeted recovery of specific microbes. …
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Roadmap for Accelerated Domestication of an Emerging Perennial Grain Crop
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