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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … a powerful generative model  now available to the global research community able to not just analyze but also create …
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Fungal Friends or Foes in Plant Roots
… fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a recent Nature Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed researchers to identify variations of essential genes in … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … of a course or internship, and before ever publishing a research article. Speakers will highlight opportunities for … credit for their contributions to science. A panel of DOE researchers, program managers, and intern alumni will …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … Frontiers Group, the National Science Foundation Graduate Research Fellowships and the Howard Hughes Medical …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
…   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … optimization for enhanced lipid production. Also notable, researchers found it is missing 33 genes thought essential … capability for Auxenochlorella means engineers can produce new bioproducts in a more predictable and reliable manner. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… traits. Given the importance of polyploidy in plants, researchers have sought to learn the origins, evolution and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  Community Science Program , the team …
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Understanding Wildfire Recovery, Starting in Soil
… clearer picture of how burned ecosystems return to health, researchers have taken a look at microbial genomes across a … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for …
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Team Science Reveals Important Protein in Poplar
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … can also be hybridized to produce desirable traits.  Partly enabled by the JGI  Community Science Program New … in the engineered plants while a Molecular Foundry researcher provided insights into how the regulatory …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … study  published in the journal  Nature , a team led by researchers at the U.S. Department of Energy (DOE) Joint … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … As  reported January 27, 2021 in  Nature , the team led by researchers at the University of Texas (UT) at Austin, the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. …
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