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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Everglades in Palm Beach County, and particularly about the microbes that play roles in the methane cycle. Their data … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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A Community Resource for Secondary Metabolite Researchers
… BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The …
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling
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You Can Move, But You Can’t Hide
… the interactions that happen between tiny organisms (microbes) located in soils and water. MGEs like viruses and … processes and evolution. This is because MGEs can affect a microbe’s ability to cycle nutrients or produce new … more accurately. Additionally, because it can process large datasets, geNomad is poised to become an essential …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… scientific results this year by assembling a collection of large datasets that will enable scientists to explore and … moving forward and to assemble, for the first time these large environmental  microbial data sets for JGI users, … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… — worked to offer researchers high-powered tools for large-scale assembly and analysis.   To put these efforts … ecologist and JGI user Trina McMahon has been sampling microbes at Lake Mendota, which borders the University of … Mendota data set, illuminating not just the highly-abundant microbes we expect to see, but also low-abundance …
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Promoting the Power of Viral Metagenomics
… that infect organisms much smaller than humans, like bacteria, this power is not surprising at all.  In fact, … For example, viruses which infect the photosynthetic cyanobacteria found throughout the planet’s oceans can exert … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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Forming Scientific Connections and Building Community
… Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from … “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical … blueprints for dozens of complex compounds, but stay largely dormant under standard conditions. As described in a … users can leverage to create a more complete picture of how microbes control useful chemistry in other organisms.  …
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Decoding Yellowstone’s Microbial Mats
… Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion … set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial mats. Along …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… through its DNA Synthesis Science Program , the JGI enables large-scale synthesis support, sequencing, integrative … expression in the organism Clostridium autoethanogenum. The microbe can utilize carbon oxides, including the greenhouse … on thiolases, a superfamily of enzymes found only in microbes, which make carbon-carbon bonds. This ability is …
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