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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San Francisco Bay Area counties. The JGI, … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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A More Intuitive Phytozome Interface
… plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the … at  https://phytozome-next.jgi.doe.gov/jbrowse/index.html How can I access the genome data that was formerly at … of the InterMine data warehouse, is still available in v13. However, the genomes included in PhytoMine will typically …
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to applying artificial intelligence to … Jonelle Basso, Heejung Cho Project:  Characterizing how resident phages shape their host phenotype Graduate …
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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating Collaborations for User … partnership with the Environmental Molecular Sciences Laboratory (EMSL) and other national user facilities. Focus areas …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved … on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, leaving … kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less … scientists have shed light on both when and how eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature … Energy Joint Genome Institute Community Sequencing Program (CSP 502951, 2016, Population and evolutionary genomics of …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide … and other techniques. Q&A from the Webinar: 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics … narratives in KBase for SIP studies? I’d be interested in how it could possibly be incorporated with some of KBase’s …
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Building on Experience, With a Twist?
… The first time I did this internship in the summer of 2020, it was a time where the world literally stopped. …
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A User-Centered Approach to Accessing JGI Data
… year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set … data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to …
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