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Expanding Virophage Diversity
… & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able to … plant rhizosphere, wastewater, and even animal and human (for the first time) gut and taxonomically classified into 27 …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes in the … Ocean Processes and Ecology and the Daniel K. Inouye Center for Microbial Oceanography: Research and Education. … SAR324 …
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UC Merced Interns Reflect on Their JGI Summer Projects
… language processing techniques to categorize genetic information. Learn more about their work here in a series of … virtual events and technology enabled a fruitful experience for mentors and students alike. Tools like Slack, Google … career in genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than …
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How Maize Makes An Antibiotic Cocktail
… revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of … the protective function of zealexins and related compounds for other plants, including those cultivated for bioenergy. The zealexin synthesis pathway may be …
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Virus-Microbe Interactions of Mud Island Mangroves
… the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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JGI Early Career Researchers Featured in mSystems Special Issue
… sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable … Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in the developing field of virus …
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Fishing for Novel Cellulose Degraders
The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … microbes. The new technique is another tool for microbial ecologists to learn more about the diversity … approach on bacterial laboratory models to set a reference for its performance, and then applied it to environmental …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … State University, which archives and makes available for research over 100,000 samples and specimens of over 60 … co-hosted by the JGI and EMSL inviting researchers to apply for a FICUS proposal. Additionally, researchers may also …
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Doubling Down on Known Protein Families
… unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … each individual microbial species within a community. Therefore, the process hinges on referencing to existing genome … were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because …
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The Case for Conservation
… advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … could lead to the discovery of genes that could be used for multiple biotechnological applications. These … an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the University of Florida, an …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that … environmental management, contributing to bioremediation efforts for decades. Identifying resident microbes that can …
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Honey Bee Gut Microbiota Divvy Up Dinner
… in the next generation of flowering vegetation. In return for their services, bees eat plant nectar and pollen. Nectar … carries out its helpful metabolism: who’s responsible for what biochemical processes? Now, an international team … Bifidobacterium  are able to carry out this metabolic feat. For both clades, then, strains are variable in their …
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