Search

… between.” To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. Over the … described the early efforts in his keynote talk at JGI’s 2011 Annual Genomics of Energy & Environment Meeting: “What we …

Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are … with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a …

…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a … these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data …

… novel technique to access high-quality genomic information using minute quantities of DNA derived from individual … Other firsts followed. The next year, the JGI team reported the first closed and finished genome derived from … and characterize more than 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of …

… her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …

… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic … for the U.S. Department of Energy under contract DE-AC05-00OR22725. The work ( …

… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … the planet’s nutrient cycles and are potentially of use in fields ranging from agriculture to biotechnology and … In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this …

… production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …