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Improving the Cacao Genome and Phytozome
… Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …
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Team Science Reveals Important Protein in Poplar
… within poplar involved in plant growth, lignin production, and disease resistance.  The Impact With increased … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to produce desirable traits.  Partly enabled by the JGI  Community Science Program New Investigator program , …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Volland and colleagues, including researchers at the JGI and Berkeley Lab, LRC, and at the Université des … the whole cell are actually contained within a structure that has a membrane,” Volland said. “And this is very …
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Picking Up Threads of Cotton Genomics
… around the world whose livelihoods depend on cotton production, and the crop’s annual economic impact of $500 … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  Plant Program , both faculty investigators at the …
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Help from Citrus’ Bitter, Hardier Cousin
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors of the  recent study … yet sweet are its genetic secrets. This work builds upon JGI-supported research led by Gmitter and JGI’s Daniel …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since … for researchers who study viruses that infect organisms much smaller than humans, like bacteria, this power is not …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their ratios of small DNA sequence fragments called tetranucleotides, are a way to measure the collection of the … microbiome’s genetic makeup. Microbes have specific tetranucleotide frequencies, and an area’s environment hosts …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input … Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA …
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At the Forefront of Terrestrial Virus Research
… co-advised by Drs. Virginia Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …
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Virus-Microbe Interactions of Mud Island Mangroves
… will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… up the toxic chemicals is commonly known as Enhanced Reductive Dechlorination (ERD.) It is dependent on the presence … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … involved in successfully biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze …
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