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DAS Tool for Genome Reconstruction from Metagenomes
… changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture … a team of researchers has been working on improving methods for isolating and characterizing entire microbial genomes … more genomes from complex metagenomes than any of the single binning tools alone,” primarily because of its …
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate …
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The Case for Conservation
… of the male and female plants, each representing a single set of chromosomes, are available. The genome … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … could lead to the discovery of genes that could be used for multiple biotechnological applications. These …
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JGI@25: The Little Alga That Could
… energy and environmental challenges. Chlamydomonas is a single-celled alga with a unique place in evolutionary history. … to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a …
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BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
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Microbial Genomics & Metagenomics (MGM) Workshop
… (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on … Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … suggest that fungi are breaking down plant fibers, like cellulose and lignin. Bacteria, on the other hand, appear to … of Science National User Facility , with the stroke of a single proposal. …
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … “ Development of a multiplex genomic integration system for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most … the use of modern, genomic breeding in these crops. For diploid species, sequencing programs generally focus on … used to define a minimum tiling path of sequences in a single contiguous region. The JGI sequenced half of the …
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Green Algae Reveal One mRNA Encodes Many Proteins
… eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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