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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , researchers have developed and improved upon a tool … to high (596 genomes) complexity. The environmental datasets included metagenomic data from Crystal Geyser in …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce their own food and generate oxygen as a … Communications , two research teams joined forces and data sets to describe bacterial genomes for related …
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Annual Genomics of Energy & Environment Meeting
… this annual gathering of leaders from diverse disciplines to highlight how they are addressing the world’s most … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the … proposal calls on a competitive, peer-reviewed basis to the worldwide scientific community can advance your …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules were filled with … trainings that they later reported were incredibly valuable to their careers going forward. Watch this short video …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of infecting different host species? Or, do they tend to specialize, infecting just a single host? Another wrinkle … affect their prey in different ways. They have the capacity to kill outright, replicating so thoroughly that they lyse … of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying … The JGI offers SIP analysis to make these experiments accessible to more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are … production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of … , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … environmental challenges. Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over …
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JGI-KBase Panel at SACNAS
… for Scientific Contributions of Any Size What is considered to be a scientific contribution? This session will demonstrate to students (and their mentors) how to begin establishing a … to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate … marine microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures … a series of geographic coordinates which go from coastal to open ocean waters. Between 2010 and 2016, Hallam and his …
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JGI announces 2025 Functional Genomics awardees
… Chen, Matthew Cope-Arguello, Theophilus Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] … Scott, Tiffany Taylor, Setsuko Wakao and Benjamin Woolston. ] Each year, the JGI accepts proposals for … program, these projects integrate cutting-edge genomic data with predictive modeling and bioengineering to advance …
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Busting the Unbreakable Lignin
… components   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: Cellulose, … Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes … DE-AC02–05CH11231 (Lawrence Berkeley National Laboratory), and the Office of Biological and Environmental …
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