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Fishing for Novel Cellulose Degraders
… hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost … described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… collaboration is available for licensing. The Science In  Nature Communications , researchers describe a … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing … separating urine from other waste streams and recovering resources that could be used for products such as agricultural …
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Cytochrome P450‐catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.)
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Differences in crop bacterial community structure between hoatzins from different geographical locations
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Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience
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2023 Progress Report
… Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … in studies of complex biological and environmental systems. We optimize our service to the community through responsibly managing …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … about their ability to adapt to changing environments, scientists have turned their attention to the pangenomes of … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar …
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Defining a Pan-Genome for Antarctic Archaea
… broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US …
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When “The Blob” Made It Hotter Under the Water
… event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of Energy (DOE) Joint Genome Institute, an Office of Science User Facility, supported by the Office of Science of …
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