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Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … is a long and laborious process — as well as a key way scientists study microorganisms. Because microorganisms live … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Massie S. Ballon
S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary … from Wesleyan University, and a graduate certificate in science communication from UC Santa Cruz. She is one of the Biosciences Area representatives to Berkeley Lab’s Inclusion, …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Computationally Classifying Fungal Lifestyles
… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular‐mycorrhizal symbiosis in Brachypodium distachyon
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Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems
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