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Four principles to establish a universal virus taxonomy
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Expanding Virophage Diversity
… viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… determination as they came onsite. From data carpentry to science communications, their schedules were filled with … Liu, Building Expression Host in Bacilli Class using CRAGE Technology Emerald Nash and mentor Jonelle Basso, … skills, wet lab skills and overall connections. Theo Loureaux : I wanted to first discover new methods with tools …
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A User-Centered Approach to Accessing JGI Data
… and NMDC? A: We have reached out to KBase regarding use of our search API. They have expressed an interest in using … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not … Depending on the project setup, we can include as part of our data analysis plan mapping of short-reads datasets …
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The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases
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JGI announces 2025 Functional Genomics awardees
… genomic information into biological function. Through our  CSP Functional Genomics call , we look for projects … bioengineering to advance U.S. energy independence and biotechnology innovation. Below find a list of the 11 researchers accepted for 2025.  Proposals are accepted …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held January 19, 2021. Learn more here in the Berkeley Lab story.   …
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Help from Citrus’ Bitter, Hardier Cousin
… citrus, trifoliate orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now … a disease ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … for a hands-on undergraduate research course for all biotechnology majors at CSU-San Marcos. That course has since …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, including … Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the …
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