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… Metagenomic datasets could help map out microbial diversity hotspots … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study … of biodiversity, they used five universally conserved, protein-coding marker genes on nearly 2 million genomes, …

… months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while … & Bikash Shrestha Project: “ Detecting Isotope Bonds in Proteins. ” Yu Lu : ”I really enjoyed meeting and getting to … Project: “ Streamlining computational studies of misfolding proteins via high performance computing ” Erika Maquiling, …

… We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a … instrumental support, how much help can users expect for data analysis of the different omics analysis? Are users expected to be trained to handle the huge amounts of data for each of the different analysis? A:  We go from …

… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational … advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global …

… in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently analyzed use-restricted data without contacting the lab that generated that data,” …

… it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A … Epub 2019 Apr 4. Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell …

… published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people … viruses that were present in the sample. From these data it is possible to answer a wide variety of important …

… is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … event. “The tools we use to process and analyze these data are diverse and porting these codes to GPUs present … workload can leverage future HPC systems – our data and compute challenges aren’t getting any smaller and …

… (NEON) in collaboration with the National Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale projects at … The accepted proposals will lead to large-scale AI-ready data to support the global research community. See below for …