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… sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … Lab), through the JGI Community Science Program . The metagenomes were also processed using the JGI-developed … Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, metatranscriptomes and single cell genomes, …

… there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from another JGI portal, IMG:  …

… the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. … Laboratory (Berkeley Lab), as well as publicly available metagenomes, they analyzed both host and hitchhiker genomes …

… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples … lakes in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … or near-complete population genomes were recovered—termed “metagenome-assembled genomes” (MAGs)—of the nanohaloarchaea …

… Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …

… currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …

… sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and …

… reference genome, to sift for snippets of giant viruses in metagenomes. This has been useful in marine environments, … A fourth option for virus discovery is reconstructing metagenome-assembled genomes through metagenomic binning. So …

… These capabilities suggest these microbes can use conifer-derived chemical defense chemicals and surface polymers as … the analysis of mobile genetic elements across all of the metagenomes. Learn more about her time at the JGI here . …