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… Machine learning methods were applied on sequenced fungal genomes to classify gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was over 95% successful at classifying the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle …

… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual Review of … a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the …

… Global chocolate brands can’t exist without cocoa According to the  International Cocoa … team at the  HudsonAlpha Institute for Biotechnology . An updated reference genome for  T. cacao has now been … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . …

… Researchers at the JGI develop a tool to quickly and accurately identify mobile … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … of new viruses and plasmids quickly, even in massive datasets. geNomad employs two distinct approaches to identify …

… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes … by a team led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Research (BER) program to enable scientific discovery in support of the DOE mission. Fermentative metabolism occurs in … Fermentation Explorer ( GitHub ) with a series of large datasets. One test was to predict traits of more than 400 …

… provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … The team also provided several access points for these datasets. As part of a larger microbiome data integration hub, …

… of mSystems , scientists found that adding salt to the growth medium caused Streptomyces coelicolor to activate … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of … a drastic metabolic shift. The net effect is coordinated upregulation of energy production, biosynthetic precursor …

… Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two …

… episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every part of this …

… female gametes in one individual. But some, including shrub willow  Salix purpurea , employ the evolutionary strategy we … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community …