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Virus-Microbe Interactions of Mud Island Mangroves
… in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David Paez-Espino. …
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Kanwar Singh
Kanwar spends part of his time assisting JGI users by processing their single cell samples … using our high throughput pipeline. He also explores new methods for creating sequencing libraries and optimizing …
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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, making the … two students, Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These … are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible …
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JGI-USCCN Strain Sequencing Opportunity
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
Chloroflexota s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists … bacteria that act like tiny natural engineers with special skills to break down pollutants and recycle carbon. They … a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… presents… Eyes on the Prize – Launching & Sustaining Startups in Synthetic Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Webinar: Introducing the BioSANS capability
… the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the … (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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Hiroshi Otani
… joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … activity is focused on developing and implementing new technologies and methodologies that facilitate discovery … of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements …
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