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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards … with computational biologist Dylan Chivian and other KBase team members at Lawrence Berkeley National Lab. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed researchers to identify … high-value bioproducts including biofuels. In addition, the team says that this experiment outlines a roadmap that is …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year … genome was detected in samples collected by Stephen Quake’s team at Yellowstone National Park’s Obsidian Pool hot …
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DAS Tool for Genome Reconstruction from Metagenomes
… been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this approach would be greatly increased by having the … of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving methods …
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of … Symposium will take place at The Marjorie Barrick Museum of Art at the University of Nevada, Las Vegas. The poster …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding …
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How Filamentous Fungi Sense Food
… in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a … Summary As described in a  recent  mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office …
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Decoding Yellowstone’s Microbial Mats
… they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish … on the global biogeography in the haloarchaeal gene pool, a team led by University of New South Wales (UNSW)-Sydney … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … Note that beyond quantity, input quality (i.e., presence of “intact” high-molecular weight DNA) is an important … currently sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required …
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