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Murine colitis reveals a disease-associated bacteriophage community
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … of Maryland School of Medicine and her graduate work in microbial oceanography at Scripps Institution of … Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Soil virus offers insight into maintaining microorganisms
… may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can shed light … JEM and used resources at the DOE Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory …
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Supporting Global Research into Actinomycetes
… is more than just a funny word. The 500 species described within the group are responsible for roughly two-thirds of … and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially … API’s offer a space to not just store data, but for the community to discuss those data and make publicly-visible …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … MycoCosm — a platform widely used across the research community — the work lowers technical barriers for … data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 publicly available …
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Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide‐binding site leucine‐rich repeat (NBS‐LRR)‐rich genomic regions of chromosome 19 in poplar
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Extracting the Secrets of Secondary Metabolites
… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … chemical compounds of interest. Using CRAGE to domesticate target microbes, users of the U.S. Department of Energy … to identify strains able to produce secondary metabolites within a lab environment, shining a light into this …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… functions. It plays an important role in regulating microbial cellulose production and biofilm formation, which … allow researchers to easily detect and measure their target molecule. There are two main types of … for the E. coli cyclic di-GMP binding protein, Ec YcgR, within the Nano-lantern scaffold. They then mined sequence …
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Plant–microbiome interactions: from community assembly to plant health
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Streamlining Regulon Identification in Bacteria
… could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that … of transcriptional regulation as well as identification of target genes of transcription factors, particularly sigma … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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2025 NeLLi Symposium
… discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous … lineages in biogeochemical cycles and beyond, as well as microbial symbioses. We aim to foster discussions centered … to capture, define, quantify, and functionally characterize microbial diversity. The Symposium will also focus on …
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