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A Plantiful Future: Xiaohan Yang
… Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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A Model System for Perennial Grasses
… model to study drought tolerance in perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two … including researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the … near-complete genomes of P. hallii var. hallii (99.2% complete) and P. hallii var. filipes (94.8% complete) and …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for …
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Toward More Efficient Artificial Photosynthesis
… The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including … them to test composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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A Natural Mechanism Can Turbocharge Viral Evolution
… The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was previously known, throws open …
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Effects of Polar Light Cycle on Microbial Food Web
… scant, Ace Lake’s bacteria instead go through a boom and bust cycle aligned with light availability. A long-running … Antarctica, was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Mike Sneddon
… and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific Computing at … a laboratory information management (LIMS) system. He previously led the NGS Software team and metagenomic data platform …
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Streamlining Regulon Identification in Bacteria
… sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of whole transcriptomes, and the third is determining the 5’-ends by 5’-end sequencing, from which those promoter …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual … by short final presentations attended by more than 75 JGI staff. According to Axel Visel and Zhong Wang, … The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & Guohong “Albert” Wu Edgar Jimenez & Sharon Greenblum …
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