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… of machine learning, data is passed through algorithms organized into multiple interconnected layers. The … workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …

… crop breeders and researchers predict how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …

… scant, Ace Lake’s bacteria instead go through a boom and bust cycle aligned with light availability. A long-running … for nearly five decades. In these frigid systems, where organisms higher up in the food web like fish do not exist, … cycling takes place only on a microbial level. Previous studies focused on the Southern Ocean have found that in …

… The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins … injection of mutations in a particular gene might boost an organism’s fitness. Moreover, the discovery of more than …

… Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … Program Chair Ardell . He also noted that the two inaugural JGI-UC Merced Summer Internship Program alumni will …

… boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary … their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times their dry … no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome Institute ( …

… the lead of the infrastructure team and the chair of the Cluster Advisory Group (CAG), he sees his role as using the substrate provided by LBNL, where possible, and … JGI compute infrastructure is managed, through the Cluster Advisory Group composed of representatives from JGI’s …

… The Impact Traditional methods for breaking down biomass use aerobic methods (those using oxygen) to remove lignin and transform the remaining … biomass production and bioproduct engineering. Summary That organisms make use of cellulose and hemicellulose is … grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research Office contract W911NF-19-1-0010 (MAO), …

… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … completeness and removal of contamination from the host organism. As reported in Nature Biotechnology , a team from … tool can be broadly utilized by the research community to gauge virus data quality and will help researchers to follow …

… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … processes from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal … scientists to search for specific types of data across organisms, enabling them to conduct more complex types of …

… to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao Chen, Jay Chen, Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang … innovation through genomic discovery across diverse organisms and ecosystems. Scientists are engineering …

… vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too … sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. At these … be applied to biotechnology and medicine. A more robust understanding of these microbial communities could lead …