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John Vogel
… to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption … ISBN: 978-3-319-26942-9 Gordon, et. al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are … de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore genomically the whole complex …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. It must be a …
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Waiting to Respire
… popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic strategies applied by a common … a longtime JGI collaborator, postdoctoral fellow Paula Matheus Carnevali was working with a group of …
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Nikos Kyrpides
… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global metagenomics. …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … mining, empowering research collaborators to take on ambitious synthetic biology experiments. A recent special issue of … Through a series of case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … its potential production of biomass on marginal lands not usable for conventional food crops. For that reason, its …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… microorganisms for biofuel production and other sustainable applications. Summary Hot springs are … and pH levels vary wildly from spring to spring. These biodiversity hotspots harbor specialized microbial communities … A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  …
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Toward More Efficient Artificial Photosynthesis
The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including … from the atmosphere than current natural processes and use it as a sustainable resource for making high-value bioproducts. As a …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … by Congress in 1980 for Superfund sites which are hazardous waste areas that require cleanup and long-term … are ongoing to complete cleanup.  The process that was used to clean up the toxic chemicals is commonly known as …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… yield and climate resilience of algae — for potential use as biomass or in biomass conversion to biofuel. Summary … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … also opens new avenues for utilizing these organisms in sustainable practices, such as biofuel production and natural …
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Graduate Students Get Thesis Research Opportunity at the JGI
… at one of the DOE national laboratories or national user facilities. As a result of the latest call , a total of … UC Merced School of Natural Sciences. “I’m deeply concerned about climate change and this is a remarkable opportunity to … how engineered environments contribute to greenhouse gases,” Kaze said. “It’s an exciting time in the field …
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