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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Defining a Pan-Genome for Antarctic Archaea
… regional and global biogeography of haloarchaea and the structure and extent of the Antarctic microbial pan-genome. … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … pan-genome of haloarchaea contains the parts of the genome shared across all haloarchaea, along with the pool of genes …
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … genome size. The obligate symbiont’s genome is often reduced compared to that of a free-living organism. First … superphylum of extremophilic archaea first outlined by JGI scientists and their collaborators in 2013. While most …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, RNA viruses store their … are even less known than DNA viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as …
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Frederik Schulz
… to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s microbiomes. Nature …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Disclaimer
… or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would … Reference herein to any specific commercial products, process, or service by trade name, trademark, … of California, and shall not be used for advertising or product endorsement purposes. …
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A Sorghum Pangenome Opens More Doors to Discovery
… holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to … Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Soil virus offers insight into maintaining microorganisms
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … images of crystalized samples cloned and synthesized by the JGI, scientists have begun the complex process of uncovering … that break down chitin. A protein tree was then constructed with the sequence data to compare viral chitosanases …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Learning to Look
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could use to conduct a similar type of search in microbial and metagenomic … co-infecting phages in the same host cell, relying on their shared desire to avoid CRISPR-Cas immunity. In addition, …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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