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Learning to Look
… found in all inoviruses, and then checking the surrounding genes,” he said. “If these genes are similar in size and function to those in typical … is most likely not an inovirus. But if these nearby genes are both short and novel, then that’s a very good …
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Refining the Process of Identifying Algae Biotechnology Candidates
… stresses, and its transcriptome to learn more about which genes expression patterns. The analysis led to the … identification of several transcription factor regulating genes and enzymes that can modify composition of algal …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… 2007, the JGI has been working on identifying switchgrass genes related to biomass production, drought tolerance, and … Switchgrass has a large polyploid genome, which means most genes are found as multiple copies across the chromosomes. …
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A Community Resource for Secondary Metabolite Researchers
… secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As …
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Game On: High School Students Drive Everglades Metagenomics Study
… analysis.  The class had to sift through over 55 billion genes and 16 trillion DNA bases of data, to figure out what … to look at the predominant taxa and the abundance of genes involved in environmentally significant metabolic …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… genome, and these gardens allow researchers to test what genes affect the plant’s adaptability to various … Switchgrass has a large polyploid genome, which means most genes are found as multiple copies across the chromosomes. … build the necessary genome resources to directly test for genes involved in biomass yield and climate adaptation in …
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David Goodstein
… acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks regions of interest and gene copy number …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… genomes. That study multiplied the number of known viral genes by a factor of 16. The same year, the JGI expanded its … would give researchers more ways to engineer microbial genes. Eventually, whether the goal is improving soil …
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JGI@25: Studying Sorghum’s Survival Skills
… team collect diverse lines of sorghum to understand what genes exist across the species. Earlier pan-genomes for … Brachypodium distachyon ( 2017 ), have identified many more genes than found in the single reference genome, including …
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JGI@25: Strengthening Soybean
… of Missouri said he and his colleagues had identified 1,110 genes involved in lipid metabolism.  “There’s still a lot of … progress had already been made positionally cloning genes involved in agronomic traits related to nutritional …
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JGI Announces 2023 Community Science Program Awardees
This year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, …
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Boosting Small Molecule Production in Super “Soup”
Metabolic Engineering Approach for Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & …
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