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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. The planet’s microbial diversity … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Frederik Schulz
… and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … discovery pipeline and enrichment metagenomics for terrestrial protists. These approaches enable novel … of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna (Austria) …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … and Roli Wilhelm (Purdue University), share a few different ways they're working to make this technique, SIP, more …
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The Fungi That Survive In Antarctica
… are working with scientists from around the world – and the JGI – to understand them better. …
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Digging into Microbial Ecosystems Deep Underground
… about the microbial communities deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … Science (FICUS) . Through FICUS, the researchers have tapped into the resources and capabilities of both the JGI and …
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Green Algae Reveal One mRNA Encodes Many Proteins
… to dig in a little deeper, and realized what was really happening,” recalled Sean Gallaher, a research scientist in … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracking the Origins of Methane-Producing Microbes
… thought to use billions of tons of the carbon dioxide trapped in biomass each year to do so. As such, they are … cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … in microbes, these biosensors may eventually lead to ways to improve cellulose-based biofuel synthesis. …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … genomic data usage is having the appropriate contextual information, or metadata, stored with them. GOLD provides …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC … joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist at Lawrence Berkeley National … of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project …
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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … widespread, but also surprisingly active. In viruses, DGRs appear to generate diversity quickly, allowing these viruses …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … they asked – and answered – in the study that recently appeared in the Proceedings of the National Academy of …
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