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Access to Rock Star Scientists
… their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has … about the big stuff, well, the little stuff! People hold office hours and you can pop in and ask them questions about …
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Refining the Process of Identifying Algae Biotechnology Candidates
… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a container … Berkeley National Laboratory (Berkeley Lab), the National Renewable Energy Laboratory (NREL), and Los Alamos National … This research was supported by the Bioenergy Technology Office (BETO) within the Department of Energy’s Office of …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … available for research over 100,000 samples and specimens of over 60 different types of NEON samples and specimens per … staying up to date via our website, social media, and newsletter. Q:  How would people find out about the NEON …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria … to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria and Saganbacteria that diverged from …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to rapidly growing the economy of Rocket City. Grimwood is also co-director of the … paper describing the genomes of the five major cotton lineages. Grimwood was also part of the JGI team that …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with … advanced in my understandings than I would be at this stage without the internship and mentorship that followed. I …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … Agreement (2003), the JGI recognized the need to engage the community to inform necessary changes to JGI data … to NCBI as well as to the  data portals that the JGI manages, immediately after data processing. The JGI has sought …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, … mycorrhizal species. The 62 mycorrhizal species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  … The project was funded by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … diverse sorghum genomes. Deep sequencing and genetic linkage analysis improve the genome’s accuracy, and increase its … to better understand sorghum’s toughness and energy storage. The S. bicolor reference genome, BTx623, recently …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme … look at the functional redundancy of ATs, this team leveraged the JGI’s DNA synthesis capabilities to express, purify …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it to access nutrients easily from a variety of soils and has a high tolerance of extreme water …
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