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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced … on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with … — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP … microbes and microbial communities, and understanding of natural environmental processes — questions relevant to the …
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Boosting Small Molecule Production in Super “Soup”
… Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … are partnering with  Yasuo Yoshikuni and  Ian Blaby of the  DNA Synthesis Science Program . “This collaboration brings …
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Nandita Nath
… single cells and to build sequencing libraries from minimal DNA input without amplification. …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … Baldrian’s team distinguished four specific habitats within the forest floor: the leaf litter on top of the soil, …
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The fungus that made itself at home
… plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … 5, 2018 in The ISME Journal , a team led by University of Oslo scientists and including researchers at the Joint Genome Institute, a DOE Office of Science User Facility, compared the genomes of two …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … environmental challenges. Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Silver age of GOLD introduces new features
… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … Filling in the Plant Tree of Life …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … imaging. The work was enabled in part by a proposal to the DNA Synthesis CSP call , and the results are described in … for the E. coli cyclic di-GMP binding protein, Ec YcgR, within the Nano-lantern scaffold. They then mined sequence …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome … genomics, inter-organismal interactions, understanding natural communities important for carbon storage, nutrient …
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JGI & KBase at PAG XXVII
… your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January … genomic sequence information to BER-funded activities of plant systems that make use of these resources will … Changes during Leaf Senescence in  Populus 8:03 PM Natural Diversity in  Setaria  and a Novel Gene for …
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