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JGI & KBase at PAG XXVII
… your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On … in the Moss Ceratodon 7:09 PM Bioinformatic Approach to Discovering Promoters Regulating Poplar Drought Response 7:27 … Integrative Genomics Building (IGB). Click here to learn more about this move. …
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Alabama A&M Interns Access An Abundance of Knowledge
… and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant microbiome. They … workshops and networked with fellow interns and scientists alike. Want to learn more about their experience? Watch the short video below. …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the … is the JGI's Deputy for Science Programs. Click to learn more about our seven science program — their areas of focus, … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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JGI announces 2024 New Investigator portfolio
The JGI is eager to work and share our tools with a widening circle … we look for novel research projects — aligned with DOE missions and from PIs who have not led any … inclusion in the December 2024 review. You can also find more information about the JGI’s various proposal calls here. …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between … in this deep biosphere. They have adapted to acquire carbon efficiently and convert it to usable organic compounds. … nutrient cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic … to applying a broader ecosystem perspective, involving more multidisciplinary teams. The work also paved the way …
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The JGI announces 2024 awardees for our Community Science Program annual call
Megan Keller and Julia Kelliher; [below] Vassili Kouvelis, Seppe Kuehn, Tesfaye Mengiste, Egbert Schwartz, Hannah Schulman, Bram Stone and Jana … and nutrient cycling, and biogeochemistry. You can learn more about this call, as well as smaller-scale calls …
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An Automated Tool for Assessing Virus Data Quality
… in sequencing technologies and computational approaches, more and more virus sequences are being recovered and … environments. Environmental DNA sequencing can help scientist to recover the genomes of these viruses and associate … hosts. However, assembling viral genomes from metagenomes is challenging and often results in highly fragmented data, …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual … and nutrient cycling, and biogeochemistry.  You can learn more about this call, as well as our smaller-scale New …
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I-Min (Amy) Chen
… scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at … development of key components of Gene Logic’s flagship Genesis data management platforms for gene expression data, one … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Scaling Up Existing Skill Sets
Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer internship with the JGI had … working intermediately between academia and industry, which is something I didn’t even know existed before. Seeing the … thing I valued the most, such as AWS, Linux operation, and more. The JGI experiences are just so amazing and truly an …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab … on that. “The purpose of this CSP is to better understand methane cycling in mangrove wetlands in south Texas,” he … collected on Mud Island – “it’s essentially a mud island, more or less, right?” – off the coast of south Texas. At the …
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