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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental … FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, 2024. The … can also request access to the capabilities of the Biological Small-Angle Neutron Scattering (BioSANS) instrument …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. … So, Trent Northen , head of the JGI Metabolomics Technology Group, with scientists Ben Bowen and Katherine Louie …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … researchers describe a workforce development program for higher education that develops skills in fungal biology and … and developmental support from KBase (The Department of Energy Systems Biology Knowledgebase). Myco-Ed is …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … It was previously assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of … Rebecca Smith of the University of Wisconsin, Maggie Sogin of the University of California, Merced, and Kevin …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature Microbiology an important addition to the synthetic biologist’s … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as they … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me …
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Charting Progress toward Professional Goals
… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the next generation of STEM …
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Leo Baumgart
… in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … and scaled the multiDAP-seq assay, a method that enables high-throughput characterization of transcription factor … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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Katherine Louie
… Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … running 1000s of metabolite standards, and development of high-throughput untargeted analysis pipelines.  Beyond …
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Benjamin Cole
… interpret different light cues by altering their growth program, and on how plants coordinate their gene expression … using emerging single-cell characterization technologies (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Trent Northen
… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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