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Webinars on Offerings & Capabilities
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Jasmyn Pangilinan
… and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, she … portability and reliability, thereby accelerating critical insights for the JGI User community. …
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JGI announces final round of 2022 Functional Genomics awardees
… users who need help translating genomic information into biological function. Through our CSP Functional … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the … have given the researchers glimpses of the population and pangenome variations in the eucalyptus species. The researchers are already working toward a eucalyptus pangenome to better understand the genetic structural …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … to successfully domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in … bioinformatics pipelines to transition bench-scale methods into production workflows. He developed and scaled the … been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also …
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User Executive Committee Charter
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Orthophosphate uptake onto woodchips in denitrifying bioreactors is enhanced by anoxic-(anaerobic-)oxic cycling
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How Filamentous Fungi Sense Food
… from simple to complex carbohydrates, and then convert them into simple sugars. More importantly, when faced with a … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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The fungus that made itself at home
… information from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) is so … alternative biofuels and bioproducts. This study lends insights on how the fungus has responded to manmade changes … of Oslo scientists and including researchers at the Joint Genome Institute, a DOE Office of Science User Facility, …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. … Commonly known as liverwort, this was done to gain insights into gene families involved in adaptations seen in later … Science Foundation to J.M.N. (NSF 1501826), from the Japan Society for the Promotion of Science KAKENHI (JSPS …
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