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The fungus that made itself at home
… plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo … than its partner brown rots. The team’s results reflect the evolutionary gains and losses of S. lacrymans var. lacrymans …
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VEGA Symposium
… Bird rates available now General & Berkeley Lab Attendee – $250 Student – $200 Regular Rates (begin September 19, 2026) … campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward …
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The JGI announces 2024 awardees for our Community Science Program annual call
… excited to announce the fifteen scientists selected for our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, … as smaller-scale calls including our New Investigator and Functional Genomics calls, here on our website . See below …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … limits the ability of researchers to accurately perform functional assessment, host prediction, and phylogenetic … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … Atlas and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These projects … degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s … call, as well as our smaller-scale New Investigator and Functional Genomics calls, here on our website.   See below …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … 1) complementation of split luciferase (CSL) and, 2) bioluminescence resonance energy transfer (BRET)-based … their new biosensor for cyclic di-GMP. The team created functional biosensors by finding an insertion site for the …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Joint Genome Institute, Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department … five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … polyploidy in plants, researchers have sought to learn the origins, evolution and development of plant polyploids. A … after polyploidization,” said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user … community and consider new initiatives in areas such as functional studies (e.g., a functional encyclopedia building on GEBA) and in microbiome …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The … some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to …
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