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The fungus that made itself at home
… plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … 5, 2018 in The ISME Journal , a team led by University of Oslo scientists and including researchers at the Joint … than its partner brown rots. The team’s results reflect the evolutionary gains and losses of S. lacrymans var. lacrymans …
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VEGA Symposium
… campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … uncultivated viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward … providing an overview of the latest discoveries related to functional characterization of novel viral diversity, …
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The JGI announces 2024 awardees for our Community Science Program annual call
… Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, … large-scale genomic science projects relevant to the DOE’s Office of Biological and Environmental Research (BER) … as smaller-scale calls including our New Investigator and Functional Genomics calls, here on our website . See below …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … limits the ability of researchers to accurately perform functional assessment, host prediction, and phylogenetic … With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … Atlas and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes … funding grants aimed specifically at “Gene function” and “Functional genomics.” We will keep updating the Gene Atlas …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s … CSP investigators,” said Tanja Woyke, Deputy Director of JGI’s User Programs. “Many of these projects are large in … call, as well as our smaller-scale New Investigator and Functional Genomics calls, here on our website.   See below …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Joint Genome Institute, Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated … his postdoctoral studies with Carl Woese at the University of Illinois at Urbana-Champaign and at Argonne National …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … their new biosensor for cyclic di-GMP. The team created functional biosensors by finding an insertion site for the … homologous YcgR proteins and chose a set of 92 proteins for functional characterization as candidate biosensors. These …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome … five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … polyploidy in plants, researchers have sought to learn the origins, evolution and development of plant polyploids. A … after polyploidization,” said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The … some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic fungi, which can breathe oxygen — … from Santa Barbara Cottage Hospital and the University of California, Santa Barbara and a gift from the Gordon and …
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