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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research scientist … is also focused on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of …
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop … discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a … researchers. Book a session via the appointment calendar for technical help, feedback or a guided walk-through of the …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… was being waged. In the JGI@25 video below, Susan Lucas, former JGI Production Department Head and current ESnet Deputy Director of Operations, shares her … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Silver age of GOLD introduces new features
… OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … involved in the Open Green Genomes project. “We currently have 19 genomes sequenced, 15 that are in … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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A Complex Confection Decoded: Sugarcane Reference Genome
… world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … genome could help scale sustainable sugarcane conversion technologies for  biofuels and other bioproducts. Finally, … at CIRAD was supported by the International Consortium for Sugarcane Biotechnology. The work at the Institute of …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their … often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine … chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … bacterium's entire metabolism for chemical production, the study provides a blueprint that engineers can use to design …
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … Immediately following the NeLLi Symposium, join us for a 1.5–day jamboree on November 6–7 focused on improving … together to develop recommendations for cultivating new bacteria and archaea revealed by a recent genome census . A …
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