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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials
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NeLLi — Symposium on New Lineages of Life
… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … our efforts to characterize poorly-studied algal and viral genomes, and integrate with key DOE Office of … University of California, Davis proposes to develop high quality reference genomes for 10 individuals from each of …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a … Ocean Sciences described a novel technique to access high-quality genomic information using minute quantities of DNA … (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an uncultured …
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Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen … breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this …
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
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Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops
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Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)
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iPHoP: A Matchmaker for Phages and their Hosts
With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to … generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP …
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