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Webinar: Introducing the BioSANS capability
Biology (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory … (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their analysis goals. Offering this tool establishes the JGI as a leader in single-cell genomic amplification at a … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable …
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Uri Neri
… and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, …
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At the Forefront of Terrestrial Virus Research
… his PhD in Microbiology at The Ohio State University, co-advised by Drs. Virginia Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …
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How Microbes Can Protect Plants in Drier Straits
New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and …
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A Powerful Technique to Study Microbes, Now Easier
Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots …
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PhycoCosm Tutorial
… analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user …
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I-Min (Amy) Chen
… currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … Genomes (IMG) family of systems. Before joining LBNL in 2006, she was Director of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key components of …
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