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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the fastest … us closer to making poplar an economical and sustainable source of energy and materials. …
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Georg Rath
… Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, Vienna) and the High Field MRI … people and transparency and a staunch supporter of open source development processes. This expresses itself in the …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an … Riverside would focus on broad sampling of early diverging fungi, and Francis Martin of the French National Institute …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … species.  The Impact The class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter …
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JGI announces 2025 Functional Genomics awardees
… Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who … synthesis and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions … to convert renewable feedstocks into advanced biofuels and chemicals, and harnessing biomineralization processes for …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … rumen are highly capable of breaking down potential biomass sources in ways we are only just beginning to understand. A … rumen microbes gave researchers access to a collection of novel enzymes — many of which contained interesting …
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Jie Guo
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … genes provided by these chromosomes can contribute to novel traits. M. sinensis is a tetraploid, with four sets of … discoveries to develop new varieties of Miscanthus as a source of renewable bioenergy. …
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Axel Visel
… Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … Planck Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … an inovirus. But if these nearby genes are both short and novel, then that’s a very good indicator that it is a … also those associated with humans.” The work also used resources of the  National Energy Research Scientific …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and …       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … what TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five … and multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since …
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