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Charting Progress toward Professional Goals
… Students can apply for internships and work onsite with an experienced researcher who serves as their mentor. … experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at the JGI through three different … be doing research, hopefully, if I get in with them this coming fall and spring term. Deanna Beatty: Congratulations. …
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Draft genome sequences of three ruminant-associated Eubacteriales: Eubacterium ruminantium ATCC 17233T, Eubacterium uniforme ATCC 35992T, and Lacrimispora xylanisolvens DSM 3808T
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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass
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Building Wet and Dry Lab Skills
… marked the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and … undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant … transporter genes affect microbiome composition and plant growth. Under the supervision of their mentors, they were …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome … carbon and nitrogen cycles, break down plant mass (think biofuels ), enhance plant health, cause diseases, and produce … has helped to define the current shape of the microbial tree of life by filling in genomic information for thousands …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what … eating are microbes.   And so that led him to come to me with the question, well, how are the microbes being affected … born, of about 2 billion people on the planet, to you know, within my lifetime, we should hit around nine or 10, which …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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2022 Progress Report
… of the JGI is to provide the global research community with access to the most advanced integrative genome science …
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A User-Centered Approach to Accessing JGI Data
… Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … are currently limited to: Public data: datasets associated with completed projects that are eligible for public … + annotations) For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy …
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Learning to Look
… distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … or phages called inoviruses, which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic … the bacterial host. They can also influence their host’s growth and pathogenicity, in turn affecting the microbe’s …
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The Power of One, Amplified
… cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with respect to the amount of within species recombination, indicating variation in gene …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … plants, which are JGI Flagship Plants, mostly related to biofuels and feedstocks. And then we expanded that to include … poses significant challenges, as establishing standardized growth protocols demands time, and subjecting them to …
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