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Genome analysis reveals diverse novel psychrotolerant Mucilaginibacter species in Arctic tundra soils
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Methane-fed microbial communities enriched from field-grown rice support diverse heterotrophic bacteria
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2024 Progress Report
… in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … A record number of primary users — 2,456 — had active proposals with us, along with more than … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… mentors, alumni, and other JGI staff, Mouncey explained: “One of the hallmarks of JGI is our diverse workforce and our … in genomics, including JGI, is not representative of the diversity in the population, especially here in California. … Jess Jarett, a postdoctoral fellow in Tanja Woyke’s Single Cells Group who mentored 2018 intern Akshay Paropkari, …
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JGI@25: From Life at the Extremes to Editing Genomes
… The collaboration has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … with a conversation from another UC Berkeley colleague, longtime JGI collaborator Jill Banfield. "It was 2006, and I was … scoutRNA Is Required for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: …
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Tanja Woyke Elected to American Academy of Microbiology
… Microbial Genomics Program since 2009 and heads the Single Cells group. She has also served as the Functional Genomics … their genomes to the roles they play in the environment. One example, published in Nature , applied single-cell … space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded 10-fold, offering the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… by our research team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that … the adaptive potential of switchgrass and is a key component in providing genetic variation available for selection … Where did the 8X variant come from? Did they arise multiple times or does their broad distribution indicate multiple, …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The … iron-oxide microbial mats in Yellowstone National Park over time, researchers have discovered and characterized a novel … with JGI’s help. Additionally, the Marsarchaeota comprise 20-50 percent of the iron-oxide microbial mat communities in …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute … of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common neurological … Data Generation Platforms (Sequencing, Single Cell, Biodesign, and Metabolomics) as well as Research & …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… By tracking gene activity and chemical output over time, the team mapped how the bacterium redirects its … begins on the genome. This revealed a sweeping cellular response: The bacterium absorbs potassium ions to … stress. Unexpectedly, the increased salinity caused the cell to consume phosphate from its environment more quickly …
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How Filamentous Fungi Sense Food
… decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … break down the wide array of simple and complex components present in plant biomass. This is of interest for … armed with a variety of PCWDEs to first break down the components of plant cell walls, which range from simple to …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on … to deal with hot and dry conditions could help us to one day develop plants that are more drought-tolerant. These … That’s what might happen for a stressed typical plant, one that does what’s called C3 metabolism, named for a …
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