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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by … from UC Merced with at least one JGI mentor. Together, they work through a specific project that aligns with each … due to the COVID-19 pandemic. As a result, mentors set up weekly, or in some cases daily, check-ins with their …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in … University of Maryland School of Medicine and her graduate work in microbial oceanography at Scripps Institution of … Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes. Nature …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome … is funded by DOE and through continued competitive grant support from NIH. … BA in Biology, Sonoma State University … Browser ENCODE FaceBase … 2021-  NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific … and was demonstrated using a specific group of marine bacteria called “Vis6” that are found in North Sea algal …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … well as material that can be converted to energy, are made up heavily of sphagnum mosses.  New research identifies sex … avenue to explore for protecting these ecosystems. … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … sequenced and analyzed the genome of the common bean. That work was published online June 8, 2014 in the journal Nature … retain their iron content and have a longer shelf-life — up to four years. Work is now underway to transfer the trait …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect … recommendations on how the JGI Science Programs can best support the user community. Advise the JGI on other topics as …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … this task. Improving the download process for this group of users offered the promise of an immediate benefit. The … faster API downloads “Currently, our team is wrapping up work on the Phytozome download experience and beginning work …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of sorghum plants are … relationship between plant roots and arbuscular mycorrhizal fungi (AMF), known to provide plants with nutrients and … of Science (BER), DOE Grant DE-SC0012460 (to M.J.H.). Work conducted by the DOE Joint Genome Institute is …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth … at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG … conversation with a quick recap of how plants, in general, work. KAROLINA:  We all know plants take up water through …
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iPHoP: A Matchmaker for Phages and their Hosts
For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, … brings several of these approaches together into the same workflow, then uses a machine-learning model to give its … host microbes play in nutrient cycles. … This work was supported by the U.S. Department of Energy, Office of …
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Flooding and ecological restoration promote wetland microbial communities and soil functions on former cranberry farmland
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