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Marine Microbe Contains Multitudes
… different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected … was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore …
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Gut Fungi: Unexpected Source of Novel Chemicals
… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Computing from the CNSI, MRL: an NSF MRSEC (DMR-1121053) and NSF CNS-0960316. …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close … distinguish males and females even when plants with multi-year generation times are young and haven’t physically … Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of …
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Evolution of a Fungal Gene Expression Regulator
… the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may … least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like …
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Igor Grigoriev
… training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal … Algal Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in soil …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … technologies and computational approaches, more and more virus sequences are being recovered and identified from … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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JGIota: Sequencing Shiitakes with David Hibbett
David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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The Power of One, Amplified
… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … in, on, and around the planet remain unknown. In recent years, advances in sequencing technologies and bioinformatic … work was also sponsored by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734 to RS. …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Making a Lichen Together
… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer … by the National Science Foundation under Grant No. 1011101 to E.S. and J.M.L. … Fungus Genome on MycoCosm data …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which … and more. And eventually, their findings could help us grow better crops, with less impact on our planet. …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity …
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