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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme … Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to …
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JGI Mural
… 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing … science depicted. The two-story JGI mural was commissioned for the JGI’s 25th anniversary and done by Berkeley-based …
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Kjiersten Fagnan
… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … postdoctoral fellowship at NERSC and LBNL’s Computational Research Division. As a postdoc, her research focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two Corymbia citriodora subspecies variegata genomes allowed researchers to study the conservation and … receive a lot of rain.  Previous analysis of the E. grandis reference genome, an international effort by a team that …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … rely on dissolved zinc to photosynthesize. Thomas Mock, a marine microbiologist at the University of East Anglia, … bioenergy and biomanufacturing. The JGI Algal Program makes genomes and multi-omics data from JGI CSP projects publicly …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. … . The comparative framework provided by these high quality reference genome sequences could help researchers better …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and … annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from their …
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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation
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The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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Three Join the JGI User Executive Committee
… and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … base, including both university and national laboratory researchers. This will help the JGI shape its programs, … Professor in the Department of Ecology, Evolution and Marine Biology at UCSB, where she leads a research group …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI@25: From Life at the Extremes to Editing Genomes
… Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting iterative searches … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron …
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