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… being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … The work was led by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group … resistance and secondary metabolism would have been incorrectly attributed to viruses. The tool can be broadly …

… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …

… Adriana Corales, Hugh Cross, Megan DeMarche, Joanne Emerson, Matthew Hudson, Megan Keller and Julia Kelliher; [below] Vassili … Tesfaye Mengiste, Egbert Schwartz, Hannah Schulman, Bram Stone and Jana Voriskovaa The JGI is excited to announce the …

…   On November 3, 2021, the JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory … were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for …

… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … SAR324 exist in so many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 … sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of …

… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated … hard to make them work for the kinds of plant samples we study — and even go beyond, putting four different species … scale.  “All of the data are publicly accessible,” Baumgart stressed. “We want people to use it, find new things and …

… mats — to reveal how these systems adapt and contribute to global biogeochemical cycles. Additional efforts in metabolic engineering and biocatalyst design will target sustainable energy solutions, focusing on lignocellulosic thermophiles and polymer …

… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the …

… Tomas uses traditional cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial …

… Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, … Scale call. This portfolio accelerates bioenergy innovation through genomic discovery across diverse organisms and ecosystems. Scientists are engineering next-generation feedstocks through CRISPR-edited poplars with optimized …

… JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role … Find more details on the instrumentation we use and our methodology for …

… Populations of Antarctic lake microbial communities change with the … aligned with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of … period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows that the way …